Selected Publications
For a full list of publications, see my profile on Google Scholar
Peer-Reviewed
Co-first authored (*)
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ACE configurator for ELISpot: optimizing combinatorial design of pooled ELISpot assays with an epitope similarity model
Jin Seok Lee*, Dhuvarakesh Karthikeyan*, Misha Fini, Benjamin G. Vincent, Alex Rubinsteyn
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FIREVAT: finding reliable variants without artifacts in human cancer samples using etiologically relevant mutational signatures
Hyunbin Kim*, Andy Jinseok Lee*, Jongkeun Lee, Hyonho Chun, Young Seok Ju, Dongwan Hong
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Mutalisk: a web-based somatic MUTation AnaLyIS toolKit for genomic, transcriptional and
epigenomic signatures
Jongkeun Lee*, Andy Jinseok Lee*, June-Koo Lee*, Jongkeun Park, Youngoh Kwon, Seongyeol Park, Hyonho Chun, Young Seok Ju, Dongwan Hong
Co-authored
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Immune features are associated with response to neoadjuvant chemo-immunotherapy for muscle-invasive bladder cancer
Wolfgang Beckabir, Mi Zhou, Jin Seok Lee, Steven P. Vensko, Mark G. Woodcock, Hsing-Hui Wang, Sara E. Wobker, Gatphan Atassi, Alec D. Wilkinson, Kenneth Fowler, Leah M. Flick, Jeffrey S. Damrauer, Michael R. Harrison, Karen P. McKinnon, Tracy L. Rose, Matthew I. Milowsky, Jonathan S. Serody, William Y. Kim, Benjamin G. Vincent
Nature Communications 2024
[paper] -
Destin2: Integrative and cross-modality analysis of single-cell chromatin accessibility data
Peter Y Guan, Jin Seok Lee, Lihao Wang, Kevin Z Lin, Wenwen Mei, Li Chen, Yuchao Jiang
Frontiers in Genetics 2023
[paper]
Preprint
Co-first authored (*)
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Deciphering the Evolutionary History of Complex Rearrangements in Head and Neck Cancer Patients Using Multi-Omic Approach
Jeesoo Chae*, Jin Seok Lee*, Jongkeun Park, Dong-Sung Lee, Weon Seo Park, Benjamin Clock, Jesse R. Dixon, Yuh-Seog Jung, Dongwan Hong
bioRxiv 2022
[paper]